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SRX3584644: GSM2934769: col9a2+ population 1; Danio rerio; RNA-Seq
1 ILLUMINA (Illumina HiSeq 4000) run: 64.6M spots, 3.3G bases, 1.2Gb downloads

Submitted by: NCBI (GEO)
Study: Spine patterning is guided by segmentation of the notochord sheath
show Abstracthide Abstract
Notochord sheath cells were FACS isolated from 13 days post fertilization (dpf) transgenic zebrafish. Three biological replicates were used for each population, and expression profiles were determined using Illumina HiSeq. Comparison of the sample groups allowed for identification of unique candidates. The sequence reads that passed quality filters were analyzed using HISAT2, and gene counts were analyzed using HTSeq. Overall design: 3 distinct samples, with 3 replicates each. 3 distinct samples: col9a2+, entpd5a+, and col9a2/entpd5a+ (double) were isolated from the notochord sheath cells of 13 dpf transgenic zebrafish.
Sample: col9a2+ population 1
SAMN08362848 • SRS2853567 • All experiments • All runs
Organism: Danio rerio
Library:
Instrument: Illumina HiSeq 4000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Notochord sheath cells were isolated and populations were collected using fluorescence-activated cell sorting (FACS). Total RNA was prepared from each population using RNeasy Micro Plus Kit (Qiagen). Quality control was evaluated by Qubit and 2100 Bioanalyzer. Clonetech ultra low input RNA libraries were prepared for sequencing using standard Illumina protocols.
Experiment attributes:
GEO Accession: GSM2934769
Links:
Runs: 1 run, 64.6M spots, 3.3G bases, 1.2Gb
Run# of Spots# of BasesSizePublished
SRR649531864,639,5143.3G1.2Gb2018-02-20

ID:
4970146

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